`esmraldi.imzlio_mmap`¶

Module Contents¶

`get_filename_mmap`(filename)
`get_filename_h5`(filename)
`build_h5`(imzml)
`load_h5`(imzml)
`load_mmap`(imzml)
`build_mmap`(imzml)
`chunk_process`(array, fn, max_iter, chunk_size, **kwds)
`fn_coordinates`(array, i, next_index, out_i, max_iter, ...)
`fn_pixel_numbers`(array, i, next_index, out_i, ...)
`fn_image`(array, i, next_index, out_i, max_iter, **kwds)
`fn_unique`(array, i, next_index, out_i, max_iter, **kwds)
`fn_flatten`(array, i, next_index, out_i, max_iter, **kwds)
`get_spectra_mmap`(imzml, mdict[, pixel_numbers])
`get_spectra_reduced_mmap`(imzml, unique, indices_mzs, mdict)
`unique_mmap`(spectra, mdict)
`get_full_spectra_mmap`(imzml, mdict)
`get_images_from_spectra_mmap`(spectra, shape, mdict)	Extracts image as a numpy array from
`get_full_spectra_h5`(imzml, f)

esmraldi.imzlio_mmap.chunk_process(array, fn, max_iter, chunk_size, **kwds)¶

esmraldi.imzlio_mmap.fn_coordinates(array, i, next_index, out_i, max_iter, **kwds)¶

esmraldi.imzlio_mmap.fn_pixel_numbers(array, i, next_index, out_i, max_iter, **kwds)¶

esmraldi.imzlio_mmap.fn_image(array, i, next_index, out_i, max_iter, **kwds)¶

esmraldi.imzlio_mmap.fn_unique(array, i, next_index, out_i, max_iter, **kwds)¶

esmraldi.imzlio_mmap.fn_flatten(array, i, next_index, out_i, max_iter, **kwds)¶

esmraldi.imzlio_mmap.get_spectra_mmap(imzml, mdict, pixel_numbers=[])¶

esmraldi.imzlio_mmap.get_spectra_reduced_mmap(imzml, unique, indices_mzs, mdict, pixel_numbers=[])¶

esmraldi.imzlio_mmap.get_images_from_spectra_mmap(spectra, shape, mdict)¶

Extracts image as a numpy array from spectra intensities and the shape of the image, i.e the tuple (width, height)

Parameters

Returns